AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |
Back to Blog
Irapp network4/10/2023 AVAILABILITY AND IMPLEMENTATION: Source codes and the online suit available at or. The software was tested using over a 100 embryophyte chloroplast genomes and in all cases a reliable output was obtained. The input of the program is an annotation GenBank (.gb) file, the accession or GI number of the sequence or a DOGMA output file. We introduce a website for easier use of the program and R source code of the software to be used in case of preferences to be changed and integrated into personal pipelines. The software and its dependent libraries are fully coded in R and the reflected plot is scaled up to realistic size of nucleotide base pairs in the vicinity of the junction sites. It allows the users to depict the genetic architecture of up to ten chloroplast genomes in the vicinity of the sites connecting the inverted repeats to the short and long single copy regions. RESULTS: Here, we announce a new visualization tool that is specifically designed for chloroplast genomes. These tools can provide a deeper insight into the genomic structure of the organism. MOTIVATION: Genome plotting is performed using a wide range of visualizations tools each with emphasis on a different informative dimension of the genome. IRscope: An online program to visualize the junction sites of chloroplast genomes. Paper IRscope: an online program to visualize the junction sites of chloroplast genomes.Īmiryousefi A, Hyvönen J, Poczai P. Motivation: Genome plotting is performed using a wide range of visualizations tools each with emphasis on a different informative dimension of the genome.
0 Comments
Read More
Leave a Reply. |